| 1 | 1024 | Sep 2015 | Juana Briones Rancho Site | State | San Francisco | |
| 2 | 1010 | Sep 2015 | Third Baptist Church Site | State | San Francisco | |
| 3 | 1002 | Sep 2015 | Giant Powder Company Site, San Francisco | Other | San Francisco | |
| 4 | 987 | Sep 2015 | Treasure Island | State | San Francisco | |
| 5 | 974.1 | Jun 2015 | Golden Gate Bridge - San Francisco | None | San Francisco | |
| 6 | 964 | Sep 2015 | Birthplace of The United Nations, War Memorial Complex | Other | San Francisco | |
| 7 | 941 | Sep 2015 | Farnsworth's Green Street Lab | State | San Francisco | |
| 8 | 937 | Sep 2015 | Liberty Bell Slot Machine Site | State | San Francisco | |
| 9 | 876 | Sep 2015 | City of Paris Building | Other | San Francisco | |
| 10 | 875 | Mar 2017 | Old United States Mint | State | San Francisco | |
| 11 | 861 | Sep 2015 | First California State Fair Site | State | San Francisco | |
| 12 | 841 | Sep 2015 | Conservatory of Flowers | State | San Francisco | |
| 13 | 819 | Sep 2015 | Hudson's Bay Company Site | State | San Francisco | |
| 14 | 810 | Sep 2015 | Old Saint Mary’s Church | State | San Francisco | |
| 15 | 791 | Sep 2015 | Bancroft Library Site | State | San Francisco | |
| 16 | 784.1 | Apr 2014 | El Camino Real - San Francisco | State | San Francisco | |
| 17 | 772 | Sep 2015 | Original Site of Saint Mary's College Site | State | San Francisco | |
| 18 | 760 | Sep 2015 | Laurel Hill Cemetery Site | Missing | San Francisco | |
| 19 | 754 | Sep 2015 | Mark Hopkins Institute of Art Site | State | San Francisco | |
| 20 | 696 | Sep 2015 | Pony Express Site | State | San Francisco | |
| 21 | 691 | Sep 2015 | Sarcophagus of Thomas Starr King | State | San Francisco | |
| 22 | 650 | Sep 2015 | What Cheer House Site | State | San Francisco | |
| 23 | 623 | Sep 2015 | Union Square | Missing | San Francisco | |
| 24 | 587 | Sep 2015 | First Public School Site | Other | San Francisco | |
| 25 | 500 | Sep 2015 | Clay Street Hill Railroad Site | Other | San Francisco | |
| 26 | 462 | Sep 2015 | Jewish Religious Services Site | State | San Francisco | |
| 27 | 459 | Sep 2015 | Mellus and Howard Site | None | San Francisco | |
| 28 | 454 | Sep 2015 | Woodward's Gardens Site | State | San Francisco | |
| 29 | 453 | Sep 2015 | Bank of Lucas, Turner and Company | State | San Francisco | |
| 30 | 408 | Sep 2015 | Freemasons Site | Missing | San Francisco | |
| 31 | 328 | Sep 2015 | Long Wharf Site | None | San Francisco | |
| 32 | 327.1 | Sep 2015 | Mission Dolores Lagoon Site | State | San Francisco | |
| 33 | 327 | Apr 2014 | Mission San Francisco de Asís (Mission Dolores) | Other | San Francisco | |
| 34 | 236 | Sep 2015 | First Ship into San Francisco Bay - The San Carlos | State | San Francisco | |
| 35 | 192 | Sep 2015 | Jenny Lind Theatre, EL DORADO, PARKER HOUSE, AND DENNISON'S EXCHANGE | State | San Francisco | |
| 36 | 119 | Sep 2015 | Portsmouth Plaza | Other | San Francisco | |
| 37 | 91 | Sep 2015 | Telegraph Hill | Other | San Francisco | |
| 38 | 90 | Sep 2015 | Fort Gunnybags Site | Other | San Francisco | |
| 39 | 89 | Sep 2015 | Parrott Granite Block Site | None | San Francisco | |
| 40 | 88 | Sep 2015 | Niantic Storeship Site | Other | San Francisco | |
| 41 | 87 | Sep 2015 | Site of First United States Branch Mint in California | State | San Francisco | |
| 42 | 86 | Sep 2015 | California Theatre Site | Other | San Francisco | |
| 43 | 85 | Sep 2015 | Office of the California Star Newspaper Site | Other | San Francisco | |
| 44 | 84 | Sep 2015 | Rincon Hill | State | San Francisco | |
| 45 | 83 | Sep 2015 | Shoreline Markers | Other | San Francisco | |
| 46 | 82 | Sep 2015 | Castillo De San Joaquín Site | Other | San Francisco | |
| 47 | 81 | Sep 2015 | Montgomery Landing Place | Other | San Francisco | |
| 48 | 80 | Sep 2015 | Montgomery Block Site | State | San Francisco | |
| 49 | 79 | Sep 2015 | Presidio of San Francisco | State | San Francisco | |
